Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spoiid/lytb domain-containing protein | DW150_09160 | Not Available | Positive | 2235878 - 2237194 | 49959.9 |
| mfs transporter | DW150_09165 | Not Available | Positive | 2237252 - 2238526 | 47707.5 |
| acyl-coa thioesterase | DW150_09175 | Not Available | Positive | 2239009 - 2239416 | 15657.8 |
| dna-protecting protein dpra | DW150_09180 | Not Available | Positive | 2239413 - 2240528 | 40984.5 |
| glycoside hydrolase family 29 | DW150_09185 | Not Available | Negative | 2240609 - 2242492 | 70503.8 |
| duf3575 domain-containing protein | DW150_09195 | Not Available | Positive | 2243086 - 2244447 | 51992.1 |
| duf5119 domain-containing protein | DW150_09200 | Not Available | Positive | 2244414 - 2245409 | 36203.9 |
| fimbrillin family protein | DW150_09205 | Not Available | Positive | 2245458 - 2246447 | 35779.2 |
| arac family transcriptional regulator | DW150_09215 | Not Available | Positive | 2246954 - 2247814 | 33298.0 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | DW150_09220 | Not Available | Negative | 2247878 - 2248633 | 27308.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

