Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW150_09110 | Not Available | Negative | 2224484 - 2225683 | 44332.3 |
| had family hydrolase | DW150_09115 | Not Available | Negative | 2225690 - 2226412 | 27236.8 |
| upf0104 family protein | DW150_09120 | Not Available | Negative | 2226412 - 2227419 | 37715.4 |
| cdp-alcohol phosphatidyltransferase family protein | DW150_09125 | Not Available | Negative | 2227416 - 2228366 | 37221.4 |
| hypothetical protein | DW150_09130 | Not Available | Negative | 2228374 - 2229225 | 31745.9 |
| ndp-sugar synthase | DW150_09135 | Not Available | Negative | 2229245 - 2229955 | 26337.7 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DW150_09140 | Not Available | Negative | 2229997 - 2231097 | 40661.5 |
| duf4837 family protein | DW150_09145 | Not Available | Negative | 2231124 - 2232188 | 40590.1 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DW150_09150 | Not Available | Negative | 2232214 - 2233263 | 39554.0 |
| duf4922 domain-containing protein | DW150_09155 | Not Available | Positive | 2233350 - 2235821 | 94520.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

