Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | DW150_09000 | Not Available | Positive | 2206143 - 2206820 | 25902.4 |
| m3 family peptidase | DW150_09005 | Not Available | Positive | 2206978 - 2209020 | 77828.3 |
| duf4847 domain-containing protein | DW150_09010 | Not Available | Positive | 2209034 - 2209528 | 18460.7 |
| cmp deaminase | DW150_09015 | Not Available | Positive | 2209533 - 2209967 | 16211.4 |
| s41 family peptidase | DW150_09020 | Not Available | Positive | 2209982 - 2211730 | 64680.3 |
| 5-formyltetrahydrofolate cyclo-ligase | DW150_09025 | Not Available | Positive | 2211654 - 2212184 | 20481.6 |
| duf721 domain-containing protein | DW150_09030 | Not Available | Negative | 2212348 - 2212638 | 11221.9 |
| dna replication and repair protein recf | DW150_09035 | Not Available | Negative | 2212635 - 2213750 | 42735.3 |
| hypothetical protein | DW150_09040 | Not Available | Positive | 2213903 - 2214580 | 24504.2 |
| 6,7-dimethyl-8-ribityllumazine synthase | DW150_09045 | Not Available | Positive | 2214674 - 2215180 | 18159.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

