Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DW150_08750 | Not Available | Negative | 2148478 - 2148927 | 17019.3 |
| dna-binding protein | DW150_08755 | Not Available | Negative | 2149066 - 2149494 | 15522.9 |
| hypothetical protein | DW150_08760 | Not Available | Negative | 2149587 - 2149769 | 7363.13 |
| duf4248 domain-containing protein | DW150_08765 | Not Available | Positive | 2149744 - 2149974 | 8949.8 |
| duf3987 domain-containing protein | DW150_08770 | Not Available | Negative | 2150125 - 2152503 | 89928.2 |
| hypothetical protein | DW150_08775 | Not Available | Negative | 2152702 - 2152899 | 7957.92 |
| upxy family transcription antiterminator | DW150_08780 | Not Available | Positive | 2153177 - 2153677 | 18979.7 |
| nucleotidyltransferase domain-containing protein | DW150_08785 | Not Available | Positive | 2153745 - 2154035 | 10799.2 |
| lipopolysaccharide biosynthesis protein | DW150_08790 | Not Available | Positive | 2154563 - 2156080 | 56659.3 |
| hypothetical protein | DW150_08795 | Not Available | Positive | 2156720 - 2157928 | 46182.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

