Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_08550 | Not Available | Negative | 2088023 - 2088697 | 24792.2 |
| phoh family protein | DW150_08555 | Not Available | Positive | 2088855 - 2089859 | 37723.5 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DW150_08560 | Not Available | Positive | 2089880 - 2090824 | 35902.1 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | DW150_08565 | Not Available | Positive | 2090921 - 2091658 | 27935.9 |
| shikimate dehydrogenase | DW150_08570 | Not Available | Positive | 2091677 - 2092417 | 27692.7 |
| alpha/beta hydrolase | DW150_08575 | Not Available | Positive | 2092425 - 2093375 | 36619.2 |
| tpm domain-containing protein | DW150_08580 | Not Available | Positive | 2093372 - 2094292 | 33464.3 |
| lema family protein | DW150_08585 | Not Available | Positive | 2094329 - 2094910 | 21752.9 |
| chorismate synthase | DW150_08590 | Not Available | Positive | 2095119 - 2096195 | 39153.9 |
| dipeptidase | DW150_08595 | Not Available | Positive | 2096209 - 2097561 | 49838.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

