Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ketol-acid reductoisomerase | DW150_08500 | Not Available | Negative | 2077100 - 2078143 | 38227.6 |
| acyl-[acyl-carrier-protein] thioesterase | DW150_08505 | Not Available | Negative | 2078178 - 2078921 | 28472.0 |
| acetolactate synthase small subunit | DW150_08510 | Not Available | Negative | 2078918 - 2079475 | 21369.7 |
| biosynthetic-type acetolactate synthase large subunit | DW150_08515 | Not Available | Negative | 2079486 - 2081183 | 61896.7 |
| dihydroxy-acid dehydratase | DW150_08520 | Not Available | Negative | 2081282 - 2083084 | 64102.2 |
| hypothetical protein | DW150_08525 | Not Available | Negative | 2083495 - 2083869 | 14111.2 |
| peptidylprolyl isomerase | DW150_08530 | Not Available | Positive | 2084224 - 2084790 | 20643.2 |
| putative dna modification/repair radical sam protein | DW150_08535 | Not Available | Positive | 2085217 - 2086485 | 48564.8 |
| dna metabolism protein | DW150_08540 | Not Available | Positive | 2086482 - 2087249 | 30600.9 |
| trna pseudouridine(38-40) synthase trua | DW150_08545 | Not Available | Negative | 2087215 - 2088018 | 30925.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

