Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside triphosphate pyrophosphohydrolase | DW150_08400 | Not Available | Negative | 2052618 - 2053406 | 30729.6 |
| valine--trna ligase | DW150_08405 | Not Available | Positive | 2053514 - 2056141 | 99729.6 |
| hypothetical protein | DW150_08410 | Not Available | Negative | 2056322 - 2056762 | 16080.2 |
| sigma-70 family rna polymerase sigma factor | DW150_08415 | Not Available | Positive | 2056908 - 2057453 | 21109.3 |
| hypothetical protein | DW150_08420 | Not Available | Positive | 2057450 - 2057827 | 14952.9 |
| hypothetical protein | DW150_08425 | Not Available | Negative | 2057901 - 2058347 | 16864.8 |
| hypothetical protein | DW150_08430 | Not Available | Negative | 2058418 - 2059410 | 37734.2 |
| preprotein translocase subunit seca | DW150_08435 | Not Available | Negative | 2059533 - 2062829 | 125178.0 |
| alkaline phosphatase family protein | DW150_08440 | Not Available | Negative | 2062925 - 2064508 | 59458.8 |
| duf4105 domain-containing protein | DW150_08445 | Not Available | Negative | 2064505 - 2065680 | 45002.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

