Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| simpl domain-containing protein | DW150_08350 | Not Available | Positive | 2041050 - 2041751 | 26268.6 |
| hypothetical protein | DW150_08355 | Not Available | Negative | 2041842 - 2042081 | 9347.47 |
| 30s ribosomal protein s1 | DW150_08360 | Not Available | Positive | 2042278 - 2044074 | 67064.1 |
| cold shock domain-containing protein | DW150_08365 | Not Available | Positive | 2044324 - 2044770 | 17045.4 |
| ribonuclease z | DW150_08370 | Not Available | Positive | 2044841 - 2045770 | 35261.8 |
| rna polymerase sigma factor | DW150_08375 | Not Available | Positive | 2045804 - 2046355 | 21646.8 |
| hypothetical protein | DW150_08380 | Not Available | Positive | 2046400 - 2046777 | 14654.4 |
| hypothetical protein | DW150_08385 | Not Available | Positive | 2046789 - 2047235 | 17649.5 |
| tonb-dependent receptor | DW150_08390 | Not Available | Positive | 2047509 - 2050670 | 117882.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_08395 | Not Available | Positive | 2050694 - 2052424 | 65676.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

