Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon protein traj | DW150_07935 | Not Available | Negative | 1965054 - 1966073 | 37388.1 |
| duf4141 domain-containing protein | DW150_07940 | Not Available | Negative | 1966097 - 1966723 | 23943.8 |
| trag family conjugative transposon atpase | DW150_07945 | Not Available | Negative | 1966754 - 1969066 | 89001.9 |
| duf3875 domain-containing protein | DW150_07950 | Not Available | Negative | 1969085 - 1969255 | 6086.38 |
| duf4133 domain-containing protein | DW150_07955 | Not Available | Negative | 1969218 - 1969568 | 13037.5 |
| duf4134 domain-containing protein | DW150_07960 | Not Available | Negative | 1969581 - 1969796 | 7515.2 |
| hypothetical protein | DW150_07965 | Not Available | Positive | 1969783 - 1970118 | 11892.6 |
| hypothetical protein | DW150_07970 | Not Available | Negative | 1970115 - 1970300 | 6884.3 |
| hypothetical protein | DW150_07975 | Not Available | Negative | 1970649 - 1971305 | 25224.8 |
| para family protein | DW150_07980 | Not Available | Negative | 1971312 - 1971503 | 7219.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

