Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW150_07770 | Not Available | Positive | 1938097 - 1939368 | 48042.0 |
| abc transporter permease | DW150_07775 | Not Available | Positive | 1939391 - 1940647 | 47328.6 |
| abc transporter permease | DW150_07780 | Not Available | Positive | 1940661 - 1941905 | 47803.8 |
| tolc family protein | DW150_07785 | Not Available | Positive | 1942059 - 1943543 | 56994.8 |
| sigma-54-dependent fis family transcriptional regulator | DW150_07790 | Not Available | Positive | 1943629 - 1944984 | 50718.5 |
| pas domain-containing protein | DW150_07795 | Not Available | Positive | 1945007 - 1946302 | 49054.2 |
| hypothetical protein | DW150_07800 | Not Available | Positive | 1946530 - 1946697 | 6522.95 |
| hypothetical protein | DW150_07810 | Not Available | Positive | 1947372 - 1947560 | 6719.86 |
| hypothetical protein | DW150_07815 | Not Available | Positive | 1947590 - 1947832 | 9423.27 |
| lytic transglycosylase f | DW150_07820 | Not Available | Negative | 1947848 - 1949227 | 52064.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

