Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | DW150_07720 | Not Available | Positive | 1928441 - 1928977 | 21775.0 |
| hypothetical protein | DW150_07725 | Not Available | Positive | 1928985 - 1929347 | 13881.8 |
| hypothetical protein | DW150_07730 | Not Available | Positive | 1929369 - 1929917 | 21488.5 |
| hypothetical protein | DW150_07735 | Not Available | Positive | 1930073 - 1930714 | 24603.2 |
| lysm peptidoglycan-binding domain-containing protein | DW150_07740 | Not Available | Positive | 1930820 - 1931716 | 35119.6 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW150_07745 | Not Available | Positive | 1931877 - 1933124 | 46579.0 |
| abc transporter atp-binding protein | DW150_07750 | Not Available | Positive | 1933490 - 1934155 | 24564.0 |
| abc transporter permease | DW150_07755 | Not Available | Positive | 1934199 - 1935491 | 47619.8 |
| abc transporter permease | DW150_07760 | Not Available | Positive | 1935523 - 1936773 | 48027.8 |
| abc transporter permease | DW150_07765 | Not Available | Positive | 1936813 - 1938093 | 47808.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

