Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | DW150_07670 | Not Available | Negative | 1917915 - 1919201 | 48044.6 |
| molecular chaperone dnaj | DW150_07675 | Not Available | Negative | 1919296 - 1920471 | 42201.2 |
| nucleotide exchange factor grpe | DW150_07680 | Not Available | Negative | 1920491 - 1921111 | 23522.7 |
| abc-f family atpase | DW150_07685 | Not Available | Positive | 1921289 - 1922908 | 61289.0 |
| sgnh/gdsl hydrolase family protein | DW150_07690 | Not Available | Positive | 1923096 - 1924607 | 57346.3 |
| winged helix dna-binding domain-containing protein | DW150_07695 | Not Available | Negative | 1924674 - 1925726 | 40527.9 |
| cytidine deaminase | DW150_07700 | Not Available | Negative | 1925723 - 1926202 | 17788.2 |
| hypothetical protein | DW150_07705 | Not Available | Positive | 1926422 - 1926745 | 11483.7 |
| duf4476 domain-containing protein | DW150_07710 | Not Available | Negative | 1926815 - 1927426 | 22969.7 |
| duf4476 domain-containing protein | DW150_07715 | Not Available | Negative | 1927460 - 1928131 | 25553.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

