Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yccf domain-containing protein | DW150_07515 | Not Available | Positive | 1885188 - 1885556 | 13206.2 |
| 50s ribosomal protein l11 methyltransferase | DW150_07520 | Not Available | Negative | 1885778 - 1886623 | 31740.9 |
| thioredoxin | DW150_07525 | Not Available | Negative | 1886634 - 1886894 | 10400.5 |
| helicase | DW150_07530 | Not Available | Negative | 1887125 - 1889215 | 81485.2 |
| dna-binding protein | DW150_07540 | Not Available | Positive | 1889620 - 1890243 | 23839.7 |
| hypothetical protein | DW150_07545 | Not Available | Positive | 1890616 - 1892016 | 52406.5 |
| hypothetical protein | DW150_07550 | Not Available | Positive | 1892060 - 1893631 | 58572.0 |
| duf4421 domain-containing protein | DW150_07555 | Not Available | Negative | 1893704 - 1894831 | 43064.1 |
| gfo/idh/moca family oxidoreductase | DW150_07560 | Not Available | Negative | 1894841 - 1895830 | 36847.1 |
| glutamine abc transporter substrate-binding protein | DW150_07565 | Not Available | Negative | 1895919 - 1896737 | 30989.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

