Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_07465 | Not Available | Positive | 1870031 - 1871815 | 69259.9 |
| sodium-translocating pyrophosphatase | DW150_07470 | Not Available | Negative | 1871884 - 1874088 | 76968.6 |
| ygiq family radical sam protein | DW150_07475 | Not Available | Negative | 1874355 - 1876232 | 71601.4 |
| hypothetical protein | DW150_07480 | Not Available | Negative | 1876274 - 1876591 | 12230.6 |
| xanthan lyase | DW150_07485 | Not Available | Negative | 1876682 - 1879552 | 106902.0 |
| alpha-1,3-galactosidase b | DW150_07490 | Not Available | Positive | 1879635 - 1881452 | 68868.6 |
| acyltransferase | DW150_07495 | Not Available | Negative | 1881540 - 1882097 | 21264.3 |
| hypothetical protein | DW150_07500 | Not Available | Negative | 1882108 - 1882356 | 9206.38 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DW150_07505 | Not Available | Positive | 1882507 - 1884150 | 59937.0 |
| glycoside hydrolase family 25 protein | DW150_07510 | Not Available | Positive | 1884277 - 1885143 | 33941.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

