Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | DW150_07315 | Not Available | Positive | 1839603 - 1841090 | 56378.8 |
| glycosyltransferase | DW150_07320 | Not Available | Positive | 1841077 - 1842087 | 39481.2 |
| 4fe-4s dicluster domain-containing protein | DW150_07325 | Not Available | Positive | 1842084 - 1843328 | 47010.9 |
| hypothetical protein | DW150_07330 | Not Available | Positive | 1843391 - 1844389 | 37663.1 |
| hypothetical protein | DW150_07335 | Not Available | Positive | 1844386 - 1844916 | 20088.5 |
| n-acetylmuramoyl-l-alanine amidase | DW150_07340 | Not Available | Negative | 1844929 - 1845342 | 15329.5 |
| dna-binding protein | DW150_07345 | Not Available | Negative | 1845492 - 1845965 | 16817.1 |
| duf4248 domain-containing protein | DW150_07350 | Not Available | Positive | 1846246 - 1846485 | 9222.05 |
| toprim domain-containing protein | DW150_07355 | Not Available | Negative | 1846594 - 1848600 | 74919.0 |
| hypothetical protein | DW150_07360 | Not Available | Negative | 1848685 - 1849752 | 39859.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

