Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper homeostasis protein | DW150_07260 | Not Available | Negative | 1823611 - 1824099 | 17145.3 |
| peptidase s41 | DW150_07265 | Not Available | Negative | 1824256 - 1825653 | 52241.7 |
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | DW150_07270 | Not Available | Negative | 1825802 - 1827442 | 62673.3 |
| aspartate-alanine antiporter | DW150_07275 | Not Available | Negative | 1827462 - 1829162 | 61070.4 |
| hypothetical protein | DW150_07280 | Not Available | Positive | 1829288 - 1830109 | 31584.6 |
| tetratricopeptide repeat protein | DW150_07285 | Not Available | Negative | 1830101 - 1832278 | 85930.3 |
| duf418 domain-containing protein | DW150_07290 | Not Available | Negative | 1832340 - 1833524 | 45036.6 |
| transcription-repair coupling factor | DW150_07295 | Not Available | Positive | 1833632 - 1836997 | 127103.0 |
| tonb family protein | DW150_07300 | Not Available | Positive | 1837262 - 1837948 | 25625.8 |
| transcriptional regulator | DW150_07310 | Not Available | Positive | 1838592 - 1839422 | 31555.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

