Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imp dehydrogenase | DW150_07085 | Not Available | Negative | 1784573 - 1786048 | 52760.1 |
| hypothetical protein | DW150_07095 | Not Available | Positive | 1786300 - 1786734 | 17282.7 |
| dna helicase recq | DW150_07105 | Not Available | Negative | 1789632 - 1791812 | 81679.6 |
| atp-dependent clp protease atp-binding subunit clpx | DW150_07110 | Not Available | Negative | 1791970 - 1793220 | 46679.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DW150_07115 | Not Available | Negative | 1793345 - 1794016 | 24846.7 |
| trigger factor | DW150_07120 | Not Available | Negative | 1794197 - 1795552 | 51544.8 |
| rna-binding protein | DW150_07125 | Not Available | Positive | 1795934 - 1796179 | 9049.81 |
| lps export abc transporter atp-binding protein | DW150_07130 | Not Available | Negative | 1796252 - 1797073 | 31118.3 |
| abc transporter permease | DW150_07135 | Not Available | Positive | 1797202 - 1797945 | 27432.5 |
| abc transporter atp-binding protein | DW150_07140 | Not Available | Positive | 1797942 - 1798706 | 28957.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

