Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DW150_06820 | Not Available | Negative | 1719943 - 1720929 | 38546.0 |
| rna polymerase sigma-70 factor | DW150_06825 | Not Available | Negative | 1720994 - 1721596 | 23578.7 |
| glycoside hydrolase family 37 | DW150_06830 | Not Available | Negative | 1721599 - 1722981 | 53322.0 |
| hypothetical protein | DW150_06835 | Not Available | Negative | 1723141 - 1723821 | 24715.3 |
| arac family transcriptional regulator | DW150_06840 | Not Available | Positive | 1724033 - 1724935 | 35297.8 |
| nucleotidyltransferase | DW150_06845 | Not Available | Negative | 1725040 - 1725951 | 33769.1 |
| hypothetical protein | DW150_06850 | Not Available | Negative | 1726086 - 1728443 | 88990.5 |
| hypothetical protein | DW150_06855 | Not Available | Negative | 1728440 - 1733089 | 171856.0 |
| hypothetical protein | DW150_06860 | Not Available | Negative | 1733254 - 1733445 | 7010.71 |
| peptidylprolyl isomerase | DW150_06870 | Not Available | Positive | 1733842 - 1734687 | 31446.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

