Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine amidotransferase | DW150_06590 | Not Available | Negative | 1665213 - 1665830 | 22787.4 |
| duf3795 domain-containing protein | DW150_06595 | Not Available | Negative | 1665833 - 1666177 | 13169.0 |
| general stress protein | DW150_06600 | Not Available | Negative | 1666183 - 1666863 | 26036.7 |
| fimbrillin family protein | DW150_06610 | Not Available | Negative | 1668686 - 1669807 | 41490.4 |
| duf5119 domain-containing protein | DW150_06615 | Not Available | Negative | 1670416 - 1671339 | 34091.2 |
| duf3575 domain-containing protein | DW150_06620 | Not Available | Negative | 1671342 - 1672592 | 47577.8 |
| site-specific integrase | DW150_06625 | Not Available | Negative | 1672831 - 1674033 | 46329.8 |
| hypothetical protein | DW150_06635 | Not Available | Negative | 1674575 - 1674778 | 7432.97 |
| gfo/idh/moca family oxidoreductase | DW150_06650 | Not Available | Positive | 1677803 - 1679218 | 53433.9 |
| carbonic anhydrase | DW150_06655 | Not Available | Negative | 1679345 - 1679884 | 19929.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

