Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide deformylase | DW150_06540 | Not Available | Positive | 1654538 - 1655092 | 21050.7 |
| tetratricopeptide repeat protein | DW150_06545 | Not Available | Positive | 1655165 - 1657174 | 77306.4 |
| threonine--trna ligase | DW150_06550 | Not Available | Positive | 1657255 - 1659195 | 74203.1 |
| translation initiation factor if-3 | DW150_06555 | Not Available | Positive | 1659311 - 1659907 | 22653.4 |
| 50s ribosomal protein l35 | DW150_06560 | Not Available | Positive | 1659979 - 1660176 | 7367.31 |
| 50s ribosomal protein l20 | DW150_06565 | Not Available | Positive | 1660288 - 1660638 | 13181.3 |
| 4fe-4s ferredoxin | DW150_06570 | Not Available | Positive | 1661103 - 1661882 | 29079.2 |
| is110 family transposase | DW150_06575 | Not Available | Negative | 1662116 - 1663261 | 43778.1 |
| nudix domain-containing protein | DW150_06580 | Not Available | Positive | 1663429 - 1663929 | 19013.3 |
| hypothetical protein | DW150_06585 | Not Available | Negative | 1664780 - 1665208 | 16287.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

