Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase s41 | DW150_06490 | Not Available | Negative | 1644240 - 1647500 | 122981.0 |
| hypothetical protein | DW150_06495 | Not Available | Negative | 1647530 - 1647796 | 10048.5 |
| phage holin family protein | DW150_06500 | Not Available | Negative | 1647799 - 1648155 | 13401.3 |
| ytxh domain-containing protein | DW150_06505 | Not Available | Negative | 1648233 - 1648430 | 6773.24 |
| spor domain-containing protein | DW150_06510 | Not Available | Positive | 1648642 - 1649139 | 17990.4 |
| glycoside hydrolase xylanase | DW150_06515 | Not Available | Positive | 1649265 - 1650224 | 35519.7 |
| ompa family protein | DW150_06520 | Not Available | Negative | 1650621 - 1651694 | 38648.8 |
| duf3869 domain-containing protein | DW150_06525 | Not Available | Negative | 1651750 - 1652640 | 31093.8 |
| hypothetical protein | DW150_06530 | Not Available | Negative | 1652651 - 1653889 | 47760.4 |
| holliday junction resolvase ruvx | DW150_06535 | Not Available | Positive | 1654095 - 1654514 | 15859.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

