Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DW150_06390 | Not Available | Negative | 1619380 - 1620069 | 26232.9 |
| type i asparaginase | DW150_06395 | Not Available | Negative | 1620266 - 1621309 | 38712.6 |
| tryptophan synthase subunit alpha | DW150_06400 | Not Available | Negative | 1621973 - 1622749 | 28929.1 |
| phosphoribosylanthranilate isomerase | DW150_06405 | Not Available | Negative | 1622746 - 1623363 | 22804.4 |
| indole-3-glycerol phosphate synthase trpc | DW150_06410 | Not Available | Negative | 1623376 - 1624164 | 29308.5 |
| anthranilate phosphoribosyltransferase | DW150_06415 | Not Available | Negative | 1624203 - 1625198 | 36472.1 |
| aminodeoxychorismate/anthranilate synthase component ii | DW150_06420 | Not Available | Negative | 1625220 - 1625810 | 21634.0 |
| anthranilate synthase component i family protein | DW150_06425 | Not Available | Negative | 1625823 - 1627223 | 52810.4 |
| tryptophan synthase subunit beta | DW150_06430 | Not Available | Negative | 1627284 - 1628483 | 43988.0 |
| ytxh domain-containing protein | DW150_06435 | Not Available | Negative | 1628739 - 1628999 | 9298.01 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

