Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family transcriptional regulator | DW150_06290 | Not Available | Positive | 1593711 - 1594916 | 44586.1 |
| sigma-70 family rna polymerase sigma factor | DW150_06295 | Not Available | Positive | 1595028 - 1595663 | 24920.2 |
| duf4974 domain-containing protein | DW150_06300 | Not Available | Positive | 1595876 - 1596958 | 41169.2 |
| susc/raga family tonb-linked outer membrane protein | DW150_06305 | Not Available | Positive | 1597105 - 1600842 | 139694.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_06310 | Not Available | Positive | 1600858 - 1602447 | 60818.8 |
| hypothetical protein | DW150_06315 | Not Available | Positive | 1602460 - 1603704 | 47321.9 |
| had family hydrolase | DW150_06320 | Not Available | Negative | 1603817 - 1604551 | 27086.4 |
| glucose-6-phosphate isomerase | DW150_06325 | Not Available | Negative | 1604701 - 1606044 | 49078.8 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DW150_06330 | Not Available | Negative | 1606058 - 1607053 | 37089.1 |
| lysine--trna ligase | DW150_06335 | Not Available | Negative | 1607110 - 1608840 | 66509.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

