Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylglucosamine-6-phosphate deacetylase | DW150_06115 | Not Available | Positive | 1563049 - 1564212 | 42247.1 |
| heterodisulfide reductase subunit f | DW150_06125 | Not Available | Negative | 1564658 - 1565500 | 31033.4 |
| hydrogenase subunit beta | DW150_06130 | Not Available | Negative | 1565493 - 1566506 | 38041.5 |
| hypothetical protein | DW150_06135 | Not Available | Negative | 1566512 - 1567312 | 29987.5 |
| hydrogenase iron-sulfur subunit | DW150_06140 | Not Available | Negative | 1567305 - 1567778 | 18018.5 |
| arsr family transcriptional regulator | DW150_06160 | Not Available | Positive | 1569023 - 1569349 | 12204.8 |
| thioredoxin family protein | DW150_06165 | Not Available | Positive | 1569428 - 1569661 | 8371.36 |
| thioredoxin | DW150_06170 | Not Available | Positive | 1569672 - 1570115 | 16823.3 |
| sulfite exporter taue/safe family protein | DW150_06175 | Not Available | Positive | 1570117 - 1570824 | 25735.7 |
| arsenical resistance operon transcriptional repressor arsd | DW150_06180 | Not Available | Positive | 1570854 - 1571180 | 12008.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

