Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW150_05655 | Not Available | - | 1424745 - 1427846 | 114541.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_05660 | Not Available | - | 1428249 - 1430273 | 76740.4 |
| tonb-dependent receptor | DW150_05665 | Not Available | - | 1430289 - 1433597 | 123717.0 |
| hybrid sensor histidine kinase/response regulator | DW150_05670 | Not Available | + | 1433916 - 1437950 | 153221.0 |
| duf3810 domain-containing protein | DW150_05675 | Not Available | - | 1438167 - 1439207 | 40889.9 |
| duf2264 domain-containing protein | DW150_05680 | Not Available | - | 1439349 - 1441664 | 88864.1 |
| neuraminidase | DW150_05685 | Not Available | - | 1441756 - 1443030 | 49248.1 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DW150_05690 | Not Available | - | 1443453 - 1444751 | 48396.2 |
| dihydropteroate synthase | DW150_05695 | Not Available | + | 1444870 - 1445727 | 32039.9 |
| tigr00159 family protein | DW150_05700 | Not Available | + | 1445759 - 1446523 | 28478.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

