Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_05600 | Not Available | Negative | 1403208 - 1404680 | 54813.8 |
| susc/raga family tonb-linked outer membrane protein | DW150_05605 | Not Available | Negative | 1404702 - 1408088 | 124027.0 |
| duf4974 domain-containing protein | DW150_05610 | Not Available | Negative | 1408239 - 1409183 | 36220.8 |
| rna polymerase sigma-70 factor | DW150_05615 | Not Available | Negative | 1409258 - 1409818 | 22083.3 |
| tonb-dependent receptor | DW150_05625 | Not Available | Positive | 1413049 - 1416120 | 113270.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_05630 | Not Available | Positive | 1416133 - 1417686 | 58382.6 |
| glycoside hydrolase | DW150_05635 | Not Available | Negative | 1417806 - 1418807 | 37854.4 |
| beta-glucanase | DW150_05640 | Not Available | Negative | 1419132 - 1420274 | 42566.2 |
| beta-xylosidase | DW150_05645 | Not Available | Negative | 1420299 - 1422755 | 93739.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_05650 | Not Available | Negative | 1423040 - 1424731 | 62941.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

