Parabacteroides merdae strain AM14-15

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM14-15 is a Gram-negative, rod-shaped bacterium that resides in the gastrointestinal tract, specifically within human gut microbiomes. This strain is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. Notably, Parabacteroides merdae possesses flagella, which may contribute to its mobility within the gut environment. The strain has a single replicon, suggesting a streamlined genomic organization, which could influence its adaptability and functional capabilities in the gut ecosystem. P. merdae is associated with Homo sapiens, highlighting its relevance to human health and the complexities of the gut microbiota. One important health effect attributed to this strain is its potential association with OSA (obstructive sleep apnea). This link underscores the intricate relationship between gut microbiota and various health conditions. The presence of specific microbial species like P. merdae could influence metabolic processes or inflammatory responses, which may be implicated in the pathophysiology of OSA. Overall, the study of Parabacteroides merdae strain AM14-15 contributes to our understanding of gut microbiomes and their impact on human health, particularly in relation to diseases such as OSA. Further research may elucidate the specific mechanisms through which this bacterium interacts with host physiology and its potential therapeutic implications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain AM14-15

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain AM14-15
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM14-15 AM14-15.Scaf135, whole

Gene Summary

Adenine Count

1422579 bp

Thymine Count

1386460 bp

Guanine Count

1143446 bp

Cytosine Count

1179903 bp

Genome Length

5132888 bp

Protein-coding Genes

4186 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diphosphate--fructose-6-phosphate 1-phosphotransferaseDW158_14815Not AvailablePositive3524816 - 352646260069.1
tm2 domain-containing proteinDW158_14820Not AvailableNegative3526913 - 352725112934.0
riboflavin synthaseDW158_14825Not AvailablePositive3527338 - 352794022451.8
nitroreductaseDW158_14830Not AvailablePositive3527937 - 352848220420.6
mate family efflux transporterDW158_14835Not AvailableNegative3528520 - 352987549657.1
yihy/virulence factor brkb family proteinDW158_14840Not AvailableNegative3529911 - 353126951822.6
do family serine endopeptidaseDW158_14850Not AvailablePositive3532141 - 353371255070.5
rna polymerase sigma factor rpod/sigaDW158_14860Not AvailablePositive3533856 - 353471632608.2
nucleotidyl transferase abieii/abigii toxin family proteinDW158_14865Not AvailablePositive3534863 - 353571332776.5
1-deoxy-d-xylulose-5-phosphate synthaseDW158_14870Not AvailablePositive3536215 - 353812270321.1

Displaying genes 2861 – 2870 of 4264 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total