Segatella copri strain AM22-19

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AM22-19 is a gram-negative, anaerobic bacterium predominantly found in the gut of Homo sapiens. This strain is characterized by its rod shape and possesses a single replicon, indicating a relatively simple genomic structure, which may facilitate its adaptation to the gut environment. As an anaerobe, Segatella copri strain AM22-19 thrives in oxygen-free conditions, making it well-suited for the human intestinal tract, where such environments prevail. The gut microbiome plays a critical role in human health, contributing to digestion, metabolism, and immune system regulation. The presence of Segatella copri may influence these processes, although specific interactions and effects within the microbiome remain to be fully elucidated. The accession number for this strain is QRIF00000000.1, which serves as a reference for genomic data and further studies. Understanding the role of Segatella copri strain AM22-19 in the gut could provide insights into its potential contributions to human health and disease, particularly considering the complex relationships among gut microbiota and their host. Further research may explore the specific functions and interactions of this strain within the microbial community, shedding light on its ecological significance and potential implications for gut health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AM22-19

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AM22-19 AM22-19.Scaf197, whole genome

Gene Summary

Adenine Count

1026019 bp

Thymine Count

1032292 bp

Guanine Count

838853 bp

Cytosine Count

835331 bp

Genome Length

3733692 bp

Protein-coding Genes

3062 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alkaline phosphatase family proteinDW262_06880Not AvailableNegative1605076 - 160698672541.8
arac family transcriptional regulatorDW262_06885Not AvailablePositive1607171 - 160759316569.8
rna polymerase subunit sigmaDW262_06890Not AvailableNegative1607689 - 160830623365.4
pd-(d/e)xk nuclease family proteinDW262_06895Not AvailableNegative1608409 - 1611396115368.0
dna helicase uvrdDW262_06900Not AvailableNegative1611473 - 1614685124125.0
hypothetical proteinDW262_06905Not AvailableNegative1614759 - 161681078870.0
rna polymerase sigma factor rpod/sigaDW262_06910Not AvailableNegative1616950 - 161782232703.2
glycosyl hydrolase family 25DW262_06915Not AvailableNegative1617939 - 161900040446.4
trna lysidine(34) synthetase tilsDW262_06920Not AvailableNegative1619606 - 162095551179.0
3-deoxy-manno-octulosonate cytidylyltransferaseDW262_06925Not AvailableNegative1620990 - 162173327949.4

Displaying genes 1361 – 1370 of 3142 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.