Segatella copri strain AM22-2

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AM22-2 is a Gram-negative, anaerobic bacterium characterized by its rod shape. This strain is found in the gut of Homo sapiens, indicating its role in the human microbiome. The presence of a single replicon suggests a streamlined genetic architecture, which may contribute to its adaptability within the host environment. As an anaerobe, Segatella copri strain AM22-2 thrives in low-oxygen conditions typical of the gastrointestinal tract. This habitat is significant, as the gut microbiome is known to play a crucial role in human health, influencing digestion, metabolism, and immune responses. The specific interactions of Segatella copri with its host may shed light on its contributions to these processes, although the precise mechanisms remain to be fully understood. The accession number for this strain is QRIE00000000.1, which serves as a reference for researchers interested in exploring its genetic and functional characteristics further. Overall, Segatella copri strain AM22-2 exemplifies the diversity of microbial life within the human gut and underscores the importance of studying such organisms to better understand their ecological roles and potential impacts on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AM22-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AM22-2 AM22-2.Scaf182, whole genome shotgun

Gene Summary

Adenine Count

1047872 bp

Thymine Count

1054399 bp

Guanine Count

860323 bp

Cytosine Count

851245 bp

Genome Length

3814772 bp

Protein-coding Genes

3136 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDW263_09360Not AvailablePositive2161784 - 216223917732.4
helicaseDW263_09365Not AvailablePositive2162484 - 216437072467.1
sodium:proton antiporterDW263_09370Not AvailableNegative2164546 - 216591649355.1
hypothetical proteinDW263_09375Not AvailablePositive2166154 - 216707136142.1
type ii toxin-antitoxin system hipa family toxinDW263_09380Not AvailableNegative2167103 - 216836248398.7
xre family transcriptional regulatorDW263_09385Not AvailableNegative2168352 - 216866911899.6
alpha-amylaseDW263_09390Not AvailableNegative2168832 - 217055964802.4
glycoside hydrolase family 97 proteinDW263_09395Not AvailableNegative2170625 - 217272778828.2
ragb/susd family nutrient uptake outer membrane proteinDW263_09400Not AvailableNegative2172844 - 217457164562.3
susc/raga family tonb-linked outer membrane proteinDW263_09405Not AvailableNegative2174643 - 2177618109348.0

Displaying genes 1831 – 1840 of 3220 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.