Trinickia dinghuensis strain DHOM06

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dinghuensis strain DHOM06 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This strain has been cataloged under the accession number QRGA00000000.1, which provides a reference point for genetic and genomic studies related to its features and classification. The Gram-negative classification indicates that Trinickia dinghuensis strain DHOM06 possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that often influences its interactions with the environment and its susceptibility to various antibiotics. The rod shape is a common morphological trait among bacteria, which can affect the organism's motility and ability to colonize specific niches. The presence of a single replicon suggests a streamlined genetic organization, which may confer advantages in terms of replication efficiency and adaptability in specific ecological contexts. This trait could also imply a potential for stable inheritance of traits, which can be crucial for survival in various environments. In terms of biological and ecological insights, the characteristics of Trinickia dinghuensis strain DHOM06 may provide important information regarding its environmental adaptations and potential roles in microbial communities. Understanding its genetic makeup and physiological traits can shed light on its ecological functions, such as nutrient cycling or interactions with other microorganisms in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dinghuensis
Strainstrain DHOM06

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dinghuensis strain DHOM06 scaffold49, whole genome

Gene Summary

Adenine Count

1368837 bp

Thymine Count

1340388 bp

Guanine Count

2303584 bp

Cytosine Count

2356473 bp

Genome Length

7369954 bp

Protein-coding Genes

6465 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l13DWV00_32235Not AvailablePositive7073325 - 707375315921.4
30s ribosomal protein s9DWV00_32240Not AvailablePositive7073765 - 707415714382.3
iron-sulfur cluster insertion protein erpaDWV00_32245Not AvailablePositive7074438 - 707480313010.2
anhydro-n-acetylmuramic acid kinaseDWV00_32250Not AvailableNegative7074957 - 707611440746.4
tyrosine--trna ligaseDWV00_32255Not AvailablePositive7076385 - 707763245888.0
d-tyrosyl-trna(tyr) deacylaseDWV00_32260Not AvailablePositive7077702 - 707816016090.5
histidine phosphatase family proteinDWV00_32265Not AvailablePositive7078188 - 707885924208.5
cystathionine gamma-synthase family proteinDWV00_32270Not AvailablePositive7078972 - 708021343929.8
duf2236 domain-containing proteinDWV00_32275Not AvailableNegative7080332 - 708127334083.2
holliday junction branch migration dna helicase ruvbDWV00_32280Not AvailableNegative7081314 - 708238139083.9

Displaying genes 6291 – 6300 of 6555 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.