Trinickia dinghuensis strain DHOM06

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dinghuensis strain DHOM06 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This strain has been cataloged under the accession number QRGA00000000.1, which provides a reference point for genetic and genomic studies related to its features and classification. The Gram-negative classification indicates that Trinickia dinghuensis strain DHOM06 possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that often influences its interactions with the environment and its susceptibility to various antibiotics. The rod shape is a common morphological trait among bacteria, which can affect the organism's motility and ability to colonize specific niches. The presence of a single replicon suggests a streamlined genetic organization, which may confer advantages in terms of replication efficiency and adaptability in specific ecological contexts. This trait could also imply a potential for stable inheritance of traits, which can be crucial for survival in various environments. In terms of biological and ecological insights, the characteristics of Trinickia dinghuensis strain DHOM06 may provide important information regarding its environmental adaptations and potential roles in microbial communities. Understanding its genetic makeup and physiological traits can shed light on its ecological functions, such as nutrient cycling or interactions with other microorganisms in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dinghuensis
Strainstrain DHOM06

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dinghuensis strain DHOM06 scaffold49, whole genome

Gene Summary

Adenine Count

1368837 bp

Thymine Count

1340388 bp

Guanine Count

2303584 bp

Cytosine Count

2356473 bp

Genome Length

7369954 bp

Protein-coding Genes

6465 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
selenium-binding proteinDWV00_25265Not AvailableNegative5570880 - 557227452047.2
mfs transporterDWV00_25270Not AvailableNegative5572535 - 557374040591.0
xanthine dehydrogenase small subunitDWV00_25275Not AvailablePositive5574035 - 557559456114.9
xanthine dehydrogenase molybdopterin binding subunitDWV00_25280Not AvailablePositive5575668 - 557807987294.6
xanthine dehydrogenase accessory protein xdhcDWV00_25285Not AvailablePositive5578076 - 557863319772.1
nadh:flavin oxidoreductase/nadh oxidaseDWV00_25290Not AvailablePositive5578991 - 558010639988.7
c4-dicarboxylate abc transporter substrate-binding proteinDWV00_25295Not AvailablePositive5580190 - 558179456069.0
2-hydroxychromene-2-carboxylate isomeraseDWV00_25300Not AvailablePositive5581846 - 558248724251.4
lysr family transcriptional regulatorDWV00_25305Not AvailablePositive5582520 - 558348235896.5
helix-turn-helix domain-containing proteinDWV00_25310Not AvailableNegative5583583 - 558452732720.2

Displaying genes 4931 – 4940 of 6555 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.