Trinickia dinghuensis strain DHOM06

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dinghuensis strain DHOM06 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This strain has been cataloged under the accession number QRGA00000000.1, which provides a reference point for genetic and genomic studies related to its features and classification. The Gram-negative classification indicates that Trinickia dinghuensis strain DHOM06 possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that often influences its interactions with the environment and its susceptibility to various antibiotics. The rod shape is a common morphological trait among bacteria, which can affect the organism's motility and ability to colonize specific niches. The presence of a single replicon suggests a streamlined genetic organization, which may confer advantages in terms of replication efficiency and adaptability in specific ecological contexts. This trait could also imply a potential for stable inheritance of traits, which can be crucial for survival in various environments. In terms of biological and ecological insights, the characteristics of Trinickia dinghuensis strain DHOM06 may provide important information regarding its environmental adaptations and potential roles in microbial communities. Understanding its genetic makeup and physiological traits can shed light on its ecological functions, such as nutrient cycling or interactions with other microorganisms in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dinghuensis
Strainstrain DHOM06

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dinghuensis strain DHOM06 scaffold49, whole genome

Gene Summary

Adenine Count

1368837 bp

Thymine Count

1340388 bp

Guanine Count

2303584 bp

Cytosine Count

2356473 bp

Genome Length

7369954 bp

Protein-coding Genes

6465 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinDWV00_24200Not AvailableNegative5329820 - 533089039860.0
n-formylglutamate amidohydrolaseDWV00_24205Not AvailablePositive5331155 - 533205732492.6
4-hydroxy-tetrahydrodipicolinate synthaseDWV00_24210Not AvailablePositive5332178 - 533308332308.3
pyrroline-5-carboxylate reductaseDWV00_24215Not AvailablePositive5333117 - 533389027708.5
pas domain s-box proteinDWV00_24220Not AvailableNegative5333920 - 533540454230.2
lysr family transcriptional regulatorDWV00_24225Not AvailableNegative5335585 - 533647532740.1
muconate cycloisomeraseDWV00_24230Not AvailablePositive5336566 - 533769940072.4
catechol 1,2-dioxygenaseDWV00_24235Not AvailablePositive5337734 - 533863633088.1
muconolactone delta-isomeraseDWV00_24240Not AvailablePositive5338675 - 533896511055.3
dna-binding response regulatorDWV00_24245Not AvailableNegative5339088 - 533973223372.2

Displaying genes 4721 – 4730 of 6555 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.