Trinickia dinghuensis strain DHOM06

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dinghuensis strain DHOM06 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This strain has been cataloged under the accession number QRGA00000000.1, which provides a reference point for genetic and genomic studies related to its features and classification. The Gram-negative classification indicates that Trinickia dinghuensis strain DHOM06 possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that often influences its interactions with the environment and its susceptibility to various antibiotics. The rod shape is a common morphological trait among bacteria, which can affect the organism's motility and ability to colonize specific niches. The presence of a single replicon suggests a streamlined genetic organization, which may confer advantages in terms of replication efficiency and adaptability in specific ecological contexts. This trait could also imply a potential for stable inheritance of traits, which can be crucial for survival in various environments. In terms of biological and ecological insights, the characteristics of Trinickia dinghuensis strain DHOM06 may provide important information regarding its environmental adaptations and potential roles in microbial communities. Understanding its genetic makeup and physiological traits can shed light on its ecological functions, such as nutrient cycling or interactions with other microorganisms in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dinghuensis
Strainstrain DHOM06

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dinghuensis strain DHOM06 scaffold49, whole genome

Gene Summary

Adenine Count

1368837 bp

Thymine Count

1340388 bp

Guanine Count

2303584 bp

Cytosine Count

2356473 bp

Genome Length

7369954 bp

Protein-coding Genes

6465 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rip metalloprotease rsepDWV00_07920Not AvailablePositive1747549 - 174892248697.1
outer membrane protein assembly factor bamaDWV00_07925Not AvailablePositive1748992 - 175129884607.9
omph family outer membrane proteinDWV00_07930Not AvailablePositive1751335 - 175187419589.3
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseDWV00_07935Not AvailablePositive1751894 - 175296736847.4
3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabzDWV00_07940Not AvailablePositive1753087 - 175355117600.5
acyl-acp--udp-n-acetylglucosamine o-acyltransferaseDWV00_07945Not AvailablePositive1753571 - 175435927779.1
lipid-a-disaccharide synthaseDWV00_07950Not AvailablePositive1754363 - 175552941844.5
ribonuclease hiiDWV00_07955Not AvailablePositive1755526 - 175633828427.0
rna methyltransferaseDWV00_07960Not AvailablePositive1756335 - 175712027442.0
kinase/pyrophosphorylaseDWV00_07965Not AvailableNegative1757249 - 175806430427.1

Displaying genes 1611 – 1620 of 6555 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.