Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonylcarbamoyl-amp synthase | DU508_00390 | Not Available | Negative | 73418 - 74038 | 23114.7 |
| fmn-binding glutamate synthase family protein | DU508_00400 | Not Available | Positive | 74667 - 76328 | 60688.9 |
| asparagine--trna ligase | DU508_00405 | Not Available | Negative | 76750 - 78198 | 55422.2 |
| transglutaminase family protein | DU508_00410 | Not Available | Negative | 78367 - 79353 | 37577.3 |
| alpha-e domain-containing protein | DU508_00415 | Not Available | Negative | 79401 - 80336 | 36542.6 |
| circularly permuted type 2 atp-grasp protein | DU508_00420 | Not Available | Negative | 80346 - 81794 | 54524.7 |
| ferritin | DU508_00425 | Not Available | Negative | 82239 - 82766 | 20520.3 |
| hypothetical protein | DU508_00430 | Not Available | Negative | 82962 - 83321 | 13709.8 |
| mbl fold metallo-hydrolase | DU508_00435 | Not Available | Negative | 83878 - 84717 | 31887.3 |
| qace family quaternary ammonium compound efflux smr transporter | DU508_00440 | Not Available | Negative | 84911 - 85240 | 12043.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

