Pedobacter chinensis strain JDX94

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter chinensis strain JDX94 is a bacterial strain characterized by the presence of flagella, which suggests motility. This trait is important for its ability to navigate its environment, potentially aiding in nutrient acquisition and colonization. The strain possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and resource management. The genomic data for Pedobacter chinensis strain JDX94 can be accessed through the accession number QPKV00000000.1, which serves as a reference for further genetic and functional studies. The presence of flagella and the single replicon structure may contribute to the ecological role of Pedobacter chinensis strain JDX94 in its natural habitat. As a member of the Pedobacter genus, it may participate in the decomposition of organic matter, thus playing a role in nutrient cycling within its ecosystem. Its motility could enhance its interactions with other microorganisms and its adaptation to varying environmental conditions. Understanding these traits can provide insights into the ecological dynamics of microbial communities where this strain is found.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter chinensis
Strainstrain JDX94

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter chinensis strain JDX94 Scaffold21_1, whole genome

Gene Summary

Adenine Count

1700063 bp

Thymine Count

1703139 bp

Guanine Count

1035986 bp

Cytosine Count

1008972 bp

Genome Length

5448160 bp

Protein-coding Genes

4613 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDU508_04405Not AvailableNegative1011186 - 101299466396.6
susc/raga family tonb-linked outer membrane proteinDU508_04410Not AvailableNegative1012997 - 1015855105208.0
chrd domain-containing proteinDU508_04415Not AvailableNegative1015895 - 101636217115.6
hypothetical proteinDU508_04420Not AvailableNegative1017250 - 10174989738.41
twin-arginine translocase tata/tate family subunitDU508_04425Not AvailableNegative1017738 - 10179236495.25
response regulatorDU508_04430Not AvailableNegative1018017 - 101838513534.4
polyketide cyclaseDU508_04435Not AvailablePositive1018665 - 101908416024.3
2og-fe(ii) oxygenaseDU508_04440Not AvailableNegative1019903 - 102049623025.2
dienelactone hydrolase family proteinDU508_04445Not AvailablePositive1020727 - 102159031597.0
oxidoreductaseDU508_04450Not AvailableNegative1021591 - 102260736710.6

Displaying genes 881 – 890 of 4671 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.