Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine--trna ligase/yqey domain fusion protein | DU508_21940 | Not Available | Negative | 5049833 - 5051488 | 63520.2 |
| methylmalonyl-coa mutase | DU508_21945 | Not Available | Positive | 5051607 - 5052026 | 15186.7 |
| enoyl-coa hydratase | DU508_21950 | Not Available | Positive | 5052030 - 5052809 | 27584.4 |
| sigma-54-dependent fis family transcriptional regulator | DU508_21955 | Not Available | Positive | 5052968 - 5054380 | 53000.8 |
| ai-2e family transporter | DU508_21960 | Not Available | Positive | 5054443 - 5055492 | 39346.7 |
| ytxh domain-containing protein | DU508_21965 | Not Available | Positive | 5055564 - 5055830 | 9372.02 |
| phage holin family protein | DU508_21970 | Not Available | Positive | 5055883 - 5056263 | 14261.5 |
| hypothetical protein | DU508_21975 | Not Available | Positive | 5056250 - 5056684 | 16187.9 |
| hypothetical protein | DU508_21980 | Not Available | Negative | 5056961 - 5057830 | 34479.8 |
| low molecular weight phosphotyrosine protein phosphatase | DU508_21985 | Not Available | Positive | 5058069 - 5058503 | 16496.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

