Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| comec family competence protein | DU508_02090 | Not Available | Positive | 479960 - 482047 | 80677.4 |
| enoyl-coa hydratase/isomerase family protein | DU508_02095 | Not Available | Positive | 482136 - 482912 | 28713.7 |
| hypothetical protein | DU508_02100 | Not Available | Positive | 482935 - 483615 | 24459.5 |
| s9 family peptidase | DU508_02105 | Not Available | Positive | 483710 - 485878 | 80907.0 |
| duf3307 domain-containing protein | DU508_02110 | Not Available | Negative | 485910 - 486620 | 27111.1 |
| transcriptional regulator | DU508_02115 | Not Available | Negative | 486620 - 487231 | 22617.6 |
| ligase-associated dna damage response exonuclease | DU508_02120 | Not Available | Positive | 487388 - 488416 | 38505.7 |
| atp-dependent dna ligase | DU508_02125 | Not Available | Positive | 488420 - 490009 | 61092.2 |
| ligase-associated dna damage response dexh box helicase | DU508_02130 | Not Available | Positive | 490084 - 492561 | 93593.5 |
| ligase-associated dna damage response endonuclease pdem | DU508_02135 | Not Available | Positive | 492637 - 493275 | 24338.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

