Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system vapc family toxin | DU508_01985 | Not Available | Positive | 457972 - 458340 | 13766.9 |
| hypothetical protein | DU508_01990 | Not Available | Positive | 458413 - 458784 | 14191.5 |
| hypothetical protein | DU508_01995 | Not Available | Positive | 459027 - 459797 | 28295.5 |
| cytochrome-c peroxidase | DU508_02000 | Not Available | Positive | 459850 - 460836 | 36588.1 |
| transporter | DU508_02005 | Not Available | Positive | 460799 - 461776 | 36457.4 |
| hypothetical protein | DU508_02010 | Not Available | Positive | 461787 - 462242 | 17631.6 |
| sco family protein | DU508_02015 | Not Available | Positive | 462442 - 463092 | 24618.4 |
| cytochrome c | DU508_02020 | Not Available | Positive | 463972 - 464394 | 15666.0 |
| sigma-54-dependent fis family transcriptional regulator | DU508_02030 | Not Available | Positive | 465040 - 466443 | 51943.2 |
| rlua family pseudouridine synthase | DU508_02035 | Not Available | Negative | 466603 - 467325 | 27492.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

