Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tmrna,resume consensus sequence (at 89): tttagttggcgaaaatac | Not Available | Not Available | Positive | 3666865 - 3667228 | Not Available |
| pyridoxal phosphate-dependent aminotransferase | DU508_15895 | Not Available | Negative | 3667352 - 3668548 | 44360.3 |
| duf1573 domain-containing protein | DU508_15900 | Not Available | Negative | 3668609 - 3669007 | 13982.0 |
| transketolase | DU508_15905 | Not Available | Positive | 3669177 - 3671600 | 89889.7 |
| hypothetical protein | DU508_15910 | Not Available | Positive | 3671976 - 3674102 | 81243.6 |
| dna-binding response regulator | DU508_15915 | Not Available | Negative | 3674419 - 3675171 | 28966.0 |
| duf1684 domain-containing protein | DU508_15920 | Not Available | Negative | 3675280 - 3675891 | 23524.9 |
| chorismate synthase | DU508_15925 | Not Available | Negative | 3675944 - 3677041 | 39035.5 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DU508_15930 | Not Available | Negative | 3677157 - 3678446 | 46757.8 |
| 3-deoxy-7-phosphoheptulonate synthase | DU508_15935 | Not Available | Negative | 3678716 - 3679855 | 41883.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

