Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| large-conductance mechanosensitive channel protein mscl | DU508_15535 | Not Available | Positive | 3586234 - 3586623 | 13705.3 |
| hypothetical protein | DU508_15540 | Not Available | Negative | 3586774 - 3587646 | 32897.6 |
| hypothetical protein | DU508_15545 | Not Available | Positive | 3587778 - 3588548 | 28072.0 |
| duf4288 domain-containing protein | DU508_15550 | Not Available | Positive | 3588559 - 3588906 | 12808.4 |
| sensor histidine kinase | DU508_15555 | Not Available | Positive | 3588926 - 3589957 | 39261.0 |
| response regulator | DU508_15560 | Not Available | Positive | 3589935 - 3590669 | 27507.4 |
| crispr-associated endonuclease cas2 | DU508_15565 | Not Available | Negative | 3595692 - 3596024 | 13175.2 |
| type ii crispr-associated endonuclease cas1 | DU508_15570 | Not Available | Negative | 3596025 - 3597050 | 38609.6 |
| hypothetical protein | DU508_15575 | Not Available | Negative | 3597047 - 3597346 | 11631.3 |
| type ii crispr rna-guided endonuclease cas9 | DU508_15580 | Not Available | Negative | 3597360 - 3601280 | 151669.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

