Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter chinensis strain JDX94
Accession NumberQPKV00000000.1
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosylasparaginase | DU508_01325 | Not Available | - | 315009 - 316043 | 37155.6 |
| nitrilase family protein | DU508_01330 | Not Available | - | 316105 - 316884 | 30346.4 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DU508_01335 | Not Available | - | 316930 - 318075 | 42965.9 |
| duf2271 domain-containing protein | DU508_01340 | Not Available | + | 318265 - 319797 | 56473.2 |
| peptidase | DU508_01345 | Not Available | + | 319913 - 320452 | 19973.2 |
| mfs transporter | DU508_01350 | Not Available | - | 320623 - 321849 | 43960.0 |
| vut family protein | DU508_01355 | Not Available | + | 322015 - 322785 | 28683.8 |
| hypothetical protein | DU508_01360 | Not Available | + | 322814 - 323254 | 16599.8 |
| homoserine dehydrogenase | DU508_01365 | Not Available | - | 323417 - 324655 | 46486.5 |
| homoserine o-acetyltransferase | DU508_01370 | Not Available | - | 324798 - 325898 | 40876.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.