Pedobacter chinensis strain JDX94

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter chinensis strain JDX94 is a bacterial strain characterized by the presence of flagella, which suggests motility. This trait is important for its ability to navigate its environment, potentially aiding in nutrient acquisition and colonization. The strain possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and resource management. The genomic data for Pedobacter chinensis strain JDX94 can be accessed through the accession number QPKV00000000.1, which serves as a reference for further genetic and functional studies. The presence of flagella and the single replicon structure may contribute to the ecological role of Pedobacter chinensis strain JDX94 in its natural habitat. As a member of the Pedobacter genus, it may participate in the decomposition of organic matter, thus playing a role in nutrient cycling within its ecosystem. Its motility could enhance its interactions with other microorganisms and its adaptation to varying environmental conditions. Understanding these traits can provide insights into the ecological dynamics of microbial communities where this strain is found.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter chinensis
Strainstrain JDX94

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter chinensis strain JDX94 Scaffold21_1, whole genome

Gene Summary

Adenine Count

1700063 bp

Thymine Count

1703139 bp

Guanine Count

1035986 bp

Cytosine Count

1008972 bp

Genome Length

5448160 bp

Protein-coding Genes

4613 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrolaseDU508_13455Not AvailablePositive3104750 - 310553529506.0
hypothetical proteinDU508_13460Not AvailablePositive3105574 - 3111378221089.0
hypothetical proteinDU508_13465Not AvailablePositive3111489 - 31116747322.91
hypothetical proteinDU508_13470Not AvailablePositive3111667 - 311211616843.0
wd40 repeat domain-containing proteinDU508_13475Not AvailableNegative3112113 - 311301233925.5
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieDU508_13480Not AvailableNegative3113169 - 311377122659.1
imidazole glycerol phosphate synthase subunit hisfDU508_13485Not AvailableNegative3113857 - 311508645378.8
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseDU508_13490Not AvailableNegative3115242 - 311599127998.0
imidazole glycerol phosphate synthase subunit hishDU508_13495Not AvailableNegative3115993 - 311658621563.0
hypothetical proteinDU508_13500Not AvailableNegative3116642 - 31168939371.55

Displaying genes 2661 – 2670 of 4671 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.