Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DU508_13190 | Not Available | Positive | 3049251 - 3052322 | 111277.0 |
| ragb/susd family nutrient uptake outer membrane protein | DU508_13195 | Not Available | Positive | 3052337 - 3053674 | 49099.8 |
| hypothetical protein | DU508_13200 | Not Available | Positive | 3053695 - 3056370 | 98158.0 |
| hypothetical protein | DU508_13205 | Not Available | Positive | 3056573 - 3057556 | 36521.4 |
| llm class flavin-dependent oxidoreductase | DU508_13210 | Not Available | Positive | 3057553 - 3058590 | 38918.8 |
| hypothetical protein | DU508_13215 | Not Available | Negative | 3058867 - 3059142 | 10857.0 |
| metallophosphoesterase | DU508_13220 | Not Available | Positive | 3059374 - 3060210 | 31184.6 |
| rna polymerase sigma-70 factor | DU508_13225 | Not Available | Positive | 3060305 - 3060895 | 22834.8 |
| fecr family protein | DU508_13230 | Not Available | Positive | 3060989 - 3062011 | 38279.0 |
| hypothetical protein | DU508_13235 | Not Available | Positive | 3062095 - 3063240 | 41251.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

