Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1599 domain-containing protein | DU508_09720 | Not Available | Positive | 2289873 - 2290418 | 20918.4 |
| doxx family protein | DU508_09725 | Not Available | Positive | 2290421 - 2291572 | 43369.4 |
| abc transporter permease | DU508_09730 | Not Available | Positive | 2291572 - 2292627 | 38928.4 |
| shikimate kinase | DU508_09735 | Not Available | Positive | 2292659 - 2293168 | 19382.4 |
| phytoene desaturase | DU508_09740 | Not Available | Negative | 2293376 - 2294851 | 55873.7 |
| peptidase m28 | DU508_09745 | Not Available | Negative | 2294856 - 2296796 | 73289.0 |
| isopenicillin n synthase family oxygenase | DU508_09750 | Not Available | Negative | 2296879 - 2297841 | 36049.7 |
| peptide-methionine (s)-s-oxide reductase | DU508_09755 | Not Available | Positive | 2298088 - 2298687 | 22462.1 |
| glyoxalase | DU508_09760 | Not Available | Positive | 2298773 - 2299123 | 13095.7 |
| cysteine--trna ligase | DU508_09765 | Not Available | Positive | 2299255 - 2300715 | 55123.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

