Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | DU508_08180 | Not Available | Positive | 1920542 - 1921282 | 28192.1 |
| hypothetical protein | DU508_08185 | Not Available | Positive | 1921260 - 1921472 | 8476.25 |
| yicc family protein | DU508_08190 | Not Available | Positive | 1921534 - 1922397 | 32687.9 |
| guanylate kinase | DU508_08195 | Not Available | Positive | 1922478 - 1923044 | 21675.9 |
| duf2281 domain-containing protein | DU508_08200 | Not Available | Positive | 1923080 - 1923283 | 7851.23 |
| type ii toxin-antitoxin system vapc family toxin | DU508_08205 | Not Available | Positive | 1923283 - 1923666 | 14895.8 |
| nicotinate-nucleotide adenylyltransferase | DU508_08210 | Not Available | Positive | 1923675 - 1924247 | 21899.4 |
| tolc family protein | DU508_08215 | Not Available | Negative | 1924392 - 1925792 | 51270.1 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DU508_08220 | Not Available | Negative | 1925805 - 1928984 | 115030.0 |
| efflux rnd transporter periplasmic adaptor subunit | DU508_08225 | Not Available | Negative | 1929026 - 1930195 | 41902.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

