Pedobacter chinensis strain JDX94

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter chinensis strain JDX94 is a bacterial strain characterized by the presence of flagella, which suggests motility. This trait is important for its ability to navigate its environment, potentially aiding in nutrient acquisition and colonization. The strain possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and resource management. The genomic data for Pedobacter chinensis strain JDX94 can be accessed through the accession number QPKV00000000.1, which serves as a reference for further genetic and functional studies. The presence of flagella and the single replicon structure may contribute to the ecological role of Pedobacter chinensis strain JDX94 in its natural habitat. As a member of the Pedobacter genus, it may participate in the decomposition of organic matter, thus playing a role in nutrient cycling within its ecosystem. Its motility could enhance its interactions with other microorganisms and its adaptation to varying environmental conditions. Understanding these traits can provide insights into the ecological dynamics of microbial communities where this strain is found.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter chinensis
Strainstrain JDX94

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter chinensis strain JDX94 Scaffold21_1, whole genome

Gene Summary

Adenine Count

1700063 bp

Thymine Count

1703139 bp

Guanine Count

1035986 bp

Cytosine Count

1008972 bp

Genome Length

5448160 bp

Protein-coding Genes

4613 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium:solute symporterDU508_00645Not AvailablePositive137434 - 13900257393.6
dihydrodipicolinate synthase family proteinDU508_00650Not AvailablePositive139063 - 13999534700.6
arac family transcriptional regulatorDU508_00655Not AvailableNegative140132 - 14100133781.0
fucose isomeraseDU508_00660Not AvailablePositive141231 - 14286861222.3
duf3826 domain-containing proteinDU508_00665Not AvailablePositive142883 - 14355125609.7
susc/raga family tonb-linked outer membrane proteinDU508_00670Not AvailablePositive144037 - 147198116753.0
ragb/susd family nutrient uptake outer membrane proteinDU508_00675Not AvailablePositive147209 - 14906569013.5
5s ribosomal rnaNot AvailableNot AvailablePositive148861 - 148972Not Available
hypothetical proteinDU508_00680Not AvailablePositive149113 - 15008135693.3
5s ribosomal rnaNot AvailableNot AvailablePositive149160 - 149271Not Available

Displaying genes 131 – 140 of 4671 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.