Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter chinensis |
| Strain | strain JDX94 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1700063 bp
Thymine Count
1703139 bp
Guanine Count
1035986 bp
Cytosine Count
1008972 bp
Genome Length
5448160 bp
Protein-coding Genes
4613 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | DU508_05860 | Not Available | Positive | 1382737 - 1383306 | 22557.1 |
| carboxymuconolactone decarboxylase family protein | DU508_05865 | Not Available | Positive | 1383484 - 1383918 | 16216.6 |
| glycoside hydrolase | DU508_05870 | Not Available | Negative | 1384618 - 1386249 | 60980.3 |
| pectin esterase | DU508_05875 | Not Available | Positive | 1386591 - 1387547 | 35730.1 |
| glycoside hydrolase family 28 protein | DU508_05880 | Not Available | Positive | 1387860 - 1389533 | 60567.7 |
| glycoside hydrolase family 88 protein | DU508_05885 | Not Available | Positive | 1389539 - 1391470 | 71674.7 |
| pectate lyase | DU508_05890 | Not Available | Positive | 1391608 - 1392624 | 38438.9 |
| tagaturonate reductase | DU508_05895 | Not Available | Positive | 1392712 - 1394223 | 56500.8 |
| altronate dehydratase | DU508_05900 | Not Available | Positive | 1394225 - 1395871 | 59629.0 |
| glucuronate isomerase | DU508_05905 | Not Available | Positive | 1396079 - 1397479 | 53696.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

