Marinobacter nauticus strain 105B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Marinobacteraceae

Genus

Marinobacter

Description

Marinobacter nauticus strain 105B is a Gram-negative bacterium identified from fish-processing wastewater, highlighting its adaptability to specific environmental conditions associated with this habitat. This strain possesses a single replicon, indicating a streamlined genetic organization that may contribute to its efficient metabolic processes in nutrient-rich waste environments. The presence of flagella in Marinobacter nauticus strain 105B suggests that it is motile, which could enhance its ability to navigate through the complex matrix of fish-processing wastewater. Such motility is likely crucial for colonization and survival in habitats where organic matter is abundant and can vary significantly in composition. The genomic information for this strain is cataloged under the accession number QPJI00000000.1, providing a reference point for further research and characterization. The ecological significance of Marinobacter nauticus strain 105B is underscored by its potential role in the biodegradation of organic materials present in fish-processing effluents. This capability may contribute to the mitigation of waste in aquatic environments, emphasizing the importance of microbial communities in bioremediation processes. In summary, Marinobacter nauticus strain 105B exemplifies the adaptability of microorganisms in specialized habitats, with attributes such as Gram-negative structure, flagellar motility, and single replicon genetics that facilitate its ecological role in wastewater management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyMarinobacteraceae
GenusMarinobacter
SpeciesMarinobacter nauticus
Strainstrain 105B

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfish-processing wastewater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Marinobacter nauticus strain 105B Ga0227222_155, whole genome

Gene Summary

Adenine Count

931349 bp

Thymine Count

939194 bp

Guanine Count

1246829 bp

Cytosine Count

1234099 bp

Genome Length

4352541 bp

Protein-coding Genes

4042 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pit family inorganic phosphate transporterDET61_10259Not AvailablePositive510773 - 51233855050.6
hypothetical proteinDET61_10260Not AvailablePositive512439 - 51270510151.2
glutamate decarboxylaseDET61_10261Not AvailableNegative512776 - 51445262556.4
hypothetical proteinDET61_10262Not AvailableNegative514634 - 51507416524.9
putative acyl-coa dehydrogenaseDET61_10263Not AvailableNegative515201 - 51689262119.6
tetr family transcriptional regulatorDET61_10264Not AvailableNegative516895 - 51752423192.7
hypothetical proteinDET61_10265Not AvailablePositive517794 - 5180158175.22
porphobilinogen synthaseDET61_10266Not AvailablePositive518183 - 51921437294.6
polyphosphate kinaseDET61_10267Not AvailablePositive519267 - 52140580711.8
uncharacterized protein ydga (duf945 family)DET61_10268Not AvailablePositive521447 - 52273946750.6

Displaying genes 521 – 530 of 4142 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 88 metabolites

Health Effects

No health effects information available for this bacterium.