Pseudomonas syringae pv. syringae strain B728a

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. syringae strain B728a is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source, meaning it requires organic compounds for growth. This strain exhibits mobility due to the presence of flagella and typically exists as single cells rather than in clusters. The strain thrives in a mesophilic temperature range, indicating it prefers moderate temperatures for optimal growth. Pseudomonas syringae pv. syringae B728a possesses two replicons, which suggests a complex genetic structure, and has a double membrane system, a characteristic feature of Gram-negative bacteria. This bacterium is classified as free-living, highlighting its ability to survive independently in various habitats. The ecological role of Pseudomonas syringae pv. syringae is significant, particularly as it interacts with plants, often acting as a plant pathogen. Its adaptability to diverse habitats and its aerobic nature suggest a versatile ecological niche, allowing it to thrive in different environments and potentially impacting plant health and agricultural productivity. The accessions QJTV00000000.1 and NC_007005.1 provide genetic sequences that can be utilized for further studies, enhancing our understanding of its biology and interaction with hosts. The ecological implications of Pseudomonas syringae pv. syringae strain B728a underscore its importance in ecosystems where it may influence plant health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. syringae strain B728a

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. syringae strain B728a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. syringae strain B728a

Gene Summary

Adenine Count

1357034 bp

Thymine Count

1331887 bp

Guanine Count

1891949 bp

Cytosine Count

1937382 bp

Genome Length

6518252 bp

Protein-coding Genes

5783 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
holliday junction resolvase ruvxDND47_11760Not AvailablePositive2716648 - 271708815934.2
bifunctional pyrimidine operon transcriptional regulator/uracil phosphoribosyltransferaseDND47_11765Not AvailablePositive2717187 - 271769918429.2
aspartate carbamoyltransferase catalytic subunitDND47_11770Not AvailablePositive2717712 - 271871636384.2
dihydroorotaseDND47_11775Not AvailablePositive2718713 - 271998443998.7
tm2 domain-containing proteinDND47_11785Not AvailableNegative2720267 - 272067115513.0
peptidoglycan endopeptidaseDND47_11790Not AvailablePositive2720922 - 272159924703.8
type iv pilus twitching motility protein piltDND47_11795Not AvailableNegative2721694 - 272272837979.1
yggs family pyridoxal phosphate-dependent enzymeDND47_11800Not AvailablePositive2722784 - 272347024626.4
pyrroline-5-carboxylate reductaseDND47_11805Not AvailablePositive2723492 - 272431028006.8
yggt family proteinDND47_11810Not AvailablePositive2724336 - 272492621620.0

Displaying genes 2311 – 2320 of 11225 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1768 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1768 metabolites

Health Effects

No health effects information available for this bacterium.