Pseudomonas syringae pv. syringae strain B728a

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. syringae strain B728a is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and heterotrophic energy source, meaning it requires organic compounds for growth. This strain exhibits mobility due to the presence of flagella and typically exists as single cells rather than in clusters. The strain thrives in a mesophilic temperature range, indicating it prefers moderate temperatures for optimal growth. Pseudomonas syringae pv. syringae B728a possesses two replicons, which suggests a complex genetic structure, and has a double membrane system, a characteristic feature of Gram-negative bacteria. This bacterium is classified as free-living, highlighting its ability to survive independently in various habitats. The ecological role of Pseudomonas syringae pv. syringae is significant, particularly as it interacts with plants, often acting as a plant pathogen. Its adaptability to diverse habitats and its aerobic nature suggest a versatile ecological niche, allowing it to thrive in different environments and potentially impacting plant health and agricultural productivity. The accessions QJTV00000000.1 and NC_007005.1 provide genetic sequences that can be utilized for further studies, enhancing our understanding of its biology and interaction with hosts. The ecological implications of Pseudomonas syringae pv. syringae strain B728a underscore its importance in ecosystems where it may influence plant health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. syringae strain B728a

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. syringae strain B728a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. syringae B728a, complete sequence.

Gene Summary

Adenine Count

1239828 bp

Thymine Count

1244402 bp

Guanine Count

1802655 bp

Cytosine Count

1806813 bp

Genome Length

6093698 bp

Protein-coding Genes

5112 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1066594 - 1066606Not Available
Tyrosine-type recombinase/integraseDND47_04145Not AvailableNegative1066701 - 106766636651.1
duf2384 domain-containing proteinDND47_04150Not AvailablePositive1067890 - 106835416919.2
oxidoreductaseDND47_04155Not AvailableNegative1068360 - 106934334423.4
tetr family transcriptional regulatorDND47_04160Not AvailableNegative1069393 - 107005224480.4
nitronate monooxygenaseDND47_04165Not AvailablePositive1070188 - 107126738047.6
molybdate abc transporter substrate-binding proteinDND47_04170Not AvailablePositive1071369 - 107213626966.1
molybdate abc transporter permease subunitDND47_04175Not AvailablePositive1072137 - 107281723939.0
Abc transporterDND47_04180Not AvailablePositive1072821 - 107390940021.6
Putative topoisomerasae i proteinDND47_04185Not AvailablePositive1073999 - 107506940191.4

Displaying genes 1 – 10 of 11225 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1977 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1977 metabolites

Health Effects

No health effects information available for this bacterium.